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J Clin Pathol 62:84-88 doi:10.1136/jcp.2008.058339
  • Original articles

Tissues from routine pathology archives are suitable for microRNA analyses by quantitative PCR

Table 1 Human tissue sample origins and diagnoses
miR-16 expression analysis Description of tissue sample
Human FFPE tissue from different organs (see fig 2) Normal lymphoid tissue (n = 8) Intestine (n = 11): tubular adenoma (3), tubulo-villous adenoma (1), tubular adenoma high-grade dysplasia (1), ulcerative colitis (3), Crohn disease (1), collagenous colitis (1) Bone marrow (n = 9): chronic idiopathic myelofibrosis (3), polycythaemia vera (3), essential thrombocythaemia (3) Liver (n = 15): normal transplant organ (2), breast carcinoma metastasis (1), colon carcinoma met (4), small cell lung carcinoma metastasis (1), HCV+cirrhosis (1), HCV+mild fibrosis (1), HBV+moderate fibrosis (2), steatohepatitis (3) Breast (n = 15): fibroadenoma (4), fibrocystic tissue (5), normal with calcifications (1), invasive ductal carcinoma (4), DCIS (1)
FFPE versus snap-frozen tissues (see fig 1C) FFPE human liver tissue (n = 4) FFPE human colon tissue (n = 3) Snap-frozen human liver tissue (n = 4) Snap-frozen human colon tissue (n = 3)
Length of archival tissue storage (see fig 4) 7 years: human lymph nodes, FFPE (n = 7) 17 years: human lymph nodes, FFPE (n = 7) 27 years: human lymph nodes, FFPE (n = 7) Present day: human lymph nodes, FFPE (n = 11)
  • DCIS, ductal carcinoma in-situ; FFPE, formalin-fixed paraffin-embedded; HBV, hepatitis B virus; HCV, hepatitis C virus; miR-16, miR-16 microRNA.

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